PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 386aa    MW: 43026.3 Da    PI: 9.7093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.61.6e-3282195289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaess 78 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                 +   ++e+   ++
  Vradi04g09280.1  82 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLpiipsvnnftlgypsavT---SNEA---TN 169
                      689*************************************************************555444444443332110...1111...11 PP

              TCP  79 sssasnsssg...............k 89 
                      s s+s+++++               +
  Vradi04g09280.1 170 SHSHSQPNEQlninnsihwqgsdqnS 195
                      11111122222233444454322220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.33784142IPR017887Transcription factor TCP subgroup
PfamPF036349.2E-3084211IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVPWNRILTS IKWKDKTLHL ATNNEIHKIM IKSPKEVDFA LKQEGGHSQS ISDPEKAKAP  60
SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG  120
LSQPSKVVDW LLNAAKHEID ELPPLPIIPS VNNFTLGYPS AVTSNEATNS HSHSQPNEQL  180
NINNSIHWQG SDQNSSWKLK RKEVSGEMIS TDKASWINRS EEDKQGSNNE VPSTHVMPNN  240
LLPRVNHPSF LGLLNTMPQG YQWEASASDV SHPQLENNGF SNQTDIHNIN VVPFPTSTLS  300
LSRGNSQILL CPPGAAQSYF PSHFTAMDMD QRQINHYQML SSGSQNPLAN SLNHSFSLAM  360
MSHKPLHSPN SSKSPSHKDQ DFPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-1889143155Putative transcription factor PCF6
5zkt_B9e-1889143155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496630.10.0transcription factor TCP17
RefseqXP_022635760.10.0transcription factor TCP17
TrEMBLA0A1S3TS820.0A0A1S3TS82_VIGRR; transcription factor TCP17
STRINGXP_007132732.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-41plastid transcription factor 1