PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 509aa    MW: 55439.9 Da    PI: 8.5452
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33224281260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  Vradi04g09020.1 224 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAP-DGHITEIIYKGQHNHEK 281
                      8****************************************.***************85 PP
2WRKY107.37.7e-34394452159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Vradi04g09020.1 394 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 452
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-29211283IPR003657WRKY domain
PROSITE profilePS5081123.789218282IPR003657WRKY domain
SuperFamilySSF1182906.15E-26222282IPR003657WRKY domain
SMARTSM007741.2E-36223281IPR003657WRKY domain
PfamPF031066.4E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37379454IPR003657WRKY domain
SuperFamilySSF1182901.26E-29386454IPR003657WRKY domain
PROSITE profilePS5081139.192389454IPR003657WRKY domain
SMARTSM007749.6E-40394453IPR003657WRKY domain
PfamPF031061.8E-26395452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSTPNADSGT APHPRPTITL PPRPSAEAFF SAAGGASPGP MTLVSSFFGS DAAADCRSFS  60
QLLAGAMASP MAFSATVADN SGKDDDGPHK GFKQSRPMNL VIARSPVFTV PPGLSPSGFL  120
NSPGFFSPQS PFGMSHQQAL AQVTAQAVLA QSHMHMQADY QMHPVTAPTE PPVQQPSFAL  180
NEASEQQIVP SVSEAKNAQL ETSDISQADK KYQLASQAID KPADDGYNWR KYGQKQVKGS  240
EYPRSYYKCT HLNCLVKKKV ERAPDGHITE IIYKGQHNHE KPQANRRVKD NSDSNGSAIV  300
QPKSESNSQG WVGQQVNKFS ENIPDCSVPE SDQISNQGAP RQLLPGSSGR EEVGDAKFLL  360
FRNTDLAVSE VPLSQKTVTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC  420
TSAGCNVRKH VERASTDPKA VITTYEGKHN HDVPAARNSS HNTANSNSMP LKPHNVVPEK  480
HPLLKDMDFG SNDQRPVHLR LKEEQIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40224455878Probable WRKY transcription factor 4
2lex_A2e-40224455878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497996.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-140WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3TW410.0A0A1S3TW41_VIGRR; probable WRKY transcription factor 4 isoform X1
STRINGXP_007139560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-121WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]