PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 85aa    MW: 9550.79 Da    PI: 8.533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003423501954
                     HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       ++Lr+l+P+ +          + +L+++++YI+sL
  Vradi04g08690.1 23 LVSKLRQLVPEiR---------TSKVLQETCNYIRSL 50
                     5679999999966.........5678*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-6768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-71869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRTSKVL QETCNYIRSL HREVSDLSER  60
LSQLLTTIDA DSAEAGIIRS LLNQ*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-75AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534454.16e-49transcription factor PRE6
RefseqXP_007139582.15e-49hypothetical protein PHAVU_008G041800g
RefseqXP_014497381.15e-49transcription factor PRE6
RefseqXP_017418102.15e-49PREDICTED: transcription factor PRE6-like
RefseqXP_028180391.16e-49transcription factor PRE6-like
SwissprotQ9LJX12e-34PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0L9U2591e-47A0A0L9U259_PHAAN; Uncharacterized protein
TrEMBLA0A0R0ICN41e-47A0A0R0ICN4_SOYBN; Uncharacterized protein
TrEMBLA0A0S3RS211e-47A0A0S3RS21_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TUB11e-47A0A1S3TUB1_VIGRR; transcription factor PRE6
TrEMBLA0A371E3301e-47A0A371E330_MUCPR; Transcription factor PRE5
TrEMBLA0A445J5C51e-47A0A445J5C5_GLYSO; Transcription factor PRE5
TrEMBLV7B5371e-47V7B537_PHAVU; Uncharacterized protein
STRINGGLYMA09G37370.12e-48(Glycine max)
STRINGXP_007139582.12e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.18e-37bHLH family protein