PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 24703.6 Da PI: 7.7067

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g08400.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.8	5.9e-06	76	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq +Lee F+++++++ rqV vWFqNrRa+ k Vradi04g08400.1 76 KKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTK 116 6667778888888888888887775.............69************98 PP
2	HD-ZIP_I/II	86.1	4.6e-28	75	152	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+ +LEe+F+e+++L+p prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +lk Vradi04g08400.1 75 RKKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELR-ALK 152 69*********************9.............99********************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.7E-8	7	42	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	5.99E-12	57	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-4	58	100	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-5	73	122	IPR001356	Homeobox domain
CDD	cd00086	1.46E-8	75	119	No hit	No description
PROSITE profile	PS50071	9.28	101	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	101	121	IPR009057	Homeodomain-like
SMART	SM00340	6.6E-26	118	161	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	8.3E-12	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
RSSDVIRVID VKSTVECEED NGISSPNSAV SSVSGSKRSE RDDDNAALVA SGERTSCSRG 60 SDDDDGGGGD CEGGRKKLRL TKEQSMVLEE TFKEHNTLNP PRQVEVWFQN RRARTKLKQT 120 EVDCEYLKRC CENLTEDNRR LQKEVQELRA LKSSPQMYMH MNPPTTLTMC PSCERGHSSS 180 TSSPAAAVHP AVVPPTPRKL FGANIRRPVA VNTWPFDGSI PRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g08400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-151	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014497427.1	1e-138	homeobox-leucine zipper protein HAT3 isoform X1
Swissprot	P46602	5e-71	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A1S3TUJ9	1e-137	A0A1S3TUJ9_VIGRR; homeobox-leucine zipper protein HAT3 isoform X1
STRING	XP_007139620.1	1e-110	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-58	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]