PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07740.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 404aa    MW: 44323.4 Da    PI: 6.2504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32137195159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v +tYeg+Hnh+
  Vradi04g07740.1 137 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASHNLKYVLTTYEGKHNHD 195
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-35122197IPR003657WRKY domain
SuperFamilySSF1182902.09E-28130197IPR003657WRKY domain
PROSITE profilePS5081137.608132197IPR003657WRKY domain
SMARTSM007742.7E-37137196IPR003657WRKY domain
PfamPF031067.8E-25138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAEEGALAKA DGGFMWKNIQ SGIKDSKNSL DWKADGQERT SPTSGVTEIS DPISTNKAKS  60
LSMFESEETP ELSSTLASHD MEEDGATQAI VEDEVENDES EPKRRKKENY AAESNLPPRS  120
VREPRVVVQI ESDVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSAGCMV RKHVERASHN  180
LKYVLTTYEG KHNHDVPTAR TNNQINSSDG GLHPNGVNGQ VALALAGSAG IKPETHQTLA  240
HHFDRKPEFS NDFLRPSLIG SFSSDMKFPP SSLCQMKYPS LNNTMPYSSY GLNPDRCAAP  300
QSGSISSMFP DFPMPLPFNL PSSGKFSIAG LNFNCAKPIS PIQSFLSGQQ VKDIDTVFLR  360
PKQEQKDDTI YGSCIPSLDP NASLSSSSAP PSIYQRVMQN FPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-32128197877Probable WRKY transcription factor 4
2lex_A4e-32128197877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107PKRRKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498138.10.0probable WRKY transcription factor 33 isoform X1
RefseqXP_022635661.10.0probable WRKY transcription factor 33 isoform X2
RefseqXP_022635662.10.0probable WRKY transcription factor 33 isoform X2
TrEMBLA0A1S3TWI70.0A0A1S3TWI7_VIGRR; probable WRKY transcription factor 33 isoform X1
TrEMBLA0A3Q0EZU60.0A0A3Q0EZU6_VIGRR; probable WRKY transcription factor 33 isoform X2
STRINGXP_007139725.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.16e-43WRKY DNA-binding protein 2