PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 319aa    MW: 36050.6 Da    PI: 10.1373
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP611.7e-191274171
          E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     rk+ksL+l+   fl+l+++   + + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Vradi04g07350.1 12 RKQKSLGLF---FLRLYNRDGVRLIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYTWKG 74
                     799*****9...555***9999************...**..****************************98 PP
2E2F_TDP76.62.5e-24116195171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ +     +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Vradi04g07350.1 116 RREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNantsIMRTKVRRLYDIANVLSSMNLIEKthttnTRKPAFRWLG 195
                      689*******************************999999999*************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-21876IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.8E-221274IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.93E-131272IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.7E-151474IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-23114195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-29116195IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-13118196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-19118195IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSTSSTHHTY SRKQKSLGLF FLRLYNRDGV RLIGLDDAAS RLGVERRRIY DIVNVLESVG  60
VLARKAKNQY TWKGFSAIPE ALQELKEDGL KENPGSFDDS NDSAKAVVVF AIAENRREKS  120
LALLTQNFVK LFICSSIEMI SLDEAAKLLL GNANTSIMRT KVRRLYDIAN VLSSMNLIEK  180
THTTNTRKPA FRWLGWRGKA WSESVDLAHN SNFNEPGKRK FGTDITNTSF KRSKTDFLLD  240
GHTCKMQNQQ ENISYRVQPD RSNFEKDAKQ TSKSYQFGPF APAYVPKVGT SENSSGNQVH  300
DWDSLAQVHR PQYQNQGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-33111873228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496491.10.0E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ41e-102E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A1S3TRS40.0A0A1S3TRS4_VIGRR; E2F transcription factor-like E2FE isoform X2
STRINGXP_007138128.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-106DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]