PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 235aa    MW: 25707.8 Da    PI: 6.5944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06123149430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++i +++  L++l+P +
  Vradi04g07240.1 123 NHSLAERARREKISERMRILQDLVPGC 149
                      79***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-8117151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-5117158No hitNo description
PROSITE profilePS508889.267119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-8122156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMELLFTISV SYSSITLSCS HLPMDPPLIS DSTFSSAYTL ADIWLGTTPA FPPSDHHFSK  60
NDSGSNKRMK VEGCSVKNDG FKDEAETSSV SCNKSSEQST MPCEAPKQDY IHVRARRGQA  120
TDNHSLAERA RREKISERMR ILQDLVPGCN KFLSMKLEAV NSRMNMSLNT DGFPLKDVGG  180
TGMVFGSQAA TGYAQGSHPG CLHMQIGGGL REHDSEVSHG NETSFDRFDF LLKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-103AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497133.21e-172transcription factor BHLH089 isoform X5
SwissprotQ69WS32e-45BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S3TTM41e-170A0A1S3TTM4_VIGRR; transcription factor BHLH089 isoform X5
STRINGXP_007138141.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-42BIG PETAL P