PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g05450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 283aa    MW: 32088.8 Da    PI: 5.4208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g05450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.64e-26114173259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqKe+ +++fprsY+rCt++  gC+++k+v+r +edp + +++Y geH ++
  Vradi04g05450.1 114 DDGHQWRKYGQKEILNAKFPRSYFRCTHRdqGCQATKQVQRVQEDPILYKTIYYGEHSCK 173
                      8***************************9999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-27103174IPR003657WRKY domain
PROSITE profilePS5081120.277108171IPR003657WRKY domain
SuperFamilySSF1182903.14E-25111173IPR003657WRKY domain
SMARTSM007743.3E-36113174IPR003657WRKY domain
PfamPF031065.2E-26114173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMDNLGGGSS TRMKAIEELL REGRDSATQL RSIINGNGEN SPSAQKLVKE VFMSFHNSLL  60
LLNNNPTSEF HDASNTLPLV LVYEKQLKSL SEFIIHVCRR TEQTREKESE APIDDGHQWR  120
KYGQKEILNA KFPRSYFRCT HRDQGCQATK QVQRVQEDPI LYKTIYYGEH SCKNMGNPEI  180
ILDMSPSSSS KFLSFNNSFS TLSKQECAFL SSSFPSSVKR ECKEEIPPST SSNDYLISSD  240
LTFDDASPRH VTLSSSTPDS EYKAVDFPDL FDDVFQDFLE FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21113173869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g05450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497021.11e-176probable WRKY transcription factor 70
TrEMBLA0A1S3TTA91e-174A0A1S3TTA9_VIGRR; probable WRKY transcription factor 70
STRINGXP_007140073.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-25WRKY DNA-binding protein 30