PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 203aa    MW: 23404.2 Da    PI: 7.0168
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++++  +G g W++ a+  g++Rt+k+c++rw++yl
  Vradi04g04380.1 16 KGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Vradi04g04380.1  69 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.11163IPR017930Myb domain
SuperFamilySSF466899.73E-3113110IPR009057Homeodomain-like
SMARTSM007171.2E-121565IPR001005SANT/Myb domain
PfamPF002494.6E-161663IPR001005SANT/Myb domain
CDDcd001671.25E-91863No hitNo description
PROSITE profilePS5129425.85964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2567118IPR009057Homeodomain-like
SMARTSM007171.8E-1568116IPR001005SANT/Myb domain
PfamPF002491.5E-1669112IPR001005SANT/Myb domain
CDDcd001675.35E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDKKQCNTSQ DPEVRKGPWT MEEDLILINY ISNHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ  120
AENSQQQSNS NSEINDHQAS TSQVSTMAEP METYSSPCYQ GMLEPFSTQI PNIPDQSSCC  180
TNENNNYWSM EDIWSMQLLN GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0901840.0BT090184.1 Soybean clone JCVI-FLGm-3H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497590.11e-151myb-related protein 305-like
SwissprotP813914e-94MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S3TV161e-149A0A1S3TV16_VIGRR; myb-related protein 305-like
STRINGXP_007140962.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-87myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]