PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 421aa    MW: 47611.5 Da    PI: 8.0622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.1e-3346100155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl+Wt +LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Vradi04g03660.1  46 KPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.03343103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-3044101IPR009057Homeodomain-like
SuperFamilySSF466893.76E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2246101IPR006447Myb domain, plants
PfamPF002497.1E-94899IPR001005SANT/Myb domain
PfamPF143791.9E-24147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MYHHPQHQGK NIHSSSRMPI PSERHMFLQT GNGSGDSGLV LSTDAKPRLK WTADLHARFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQSNN VTHKMTTSAA  120
TGERLSETSG THMNKLSLGP QANKDLHISE ALQMQIEVQR RLNEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGRQNLG IVGLETAKVQ LSELVSKVSS QCLNSAFSEL KELQGFCPQQ  240
THTNQPNDCS VDSCLTSCDR SQKEQEIQNG FRHFNSHMFM EQKEATEAPN NLRNCELKWC  300
DDGKKNTFLA PLSRNEERRN YAAETGPGNL SMSIGLERET ENRSSMYPER LITENQTEVE  360
FQHRNRIKTE TMKPVDEKVS QDYRMPASYF VAPRLDLNNH GDNEAATTCK QLDLNRFSWS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1846102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1846102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1846102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1846102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1845102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497137.10.0myb-related protein 2
SwissprotQ9SQQ91e-143PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S3TTQ80.0A0A1S3TTQ8_VIGRR; myb-related protein 2
STRINGXP_007150070.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-145G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]