PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g02270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 175aa MW: 20291.5 Da PI: 11.412 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v ++G ++W+ Ia+ g++Rt+k+c++rw +yl Vradi04g02270.1 8 KGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Vradi04g02270.1 61 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.206 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-30 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.49E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.957 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.54E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVQQEVRKGP WTEQEDFKLV SFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTLMRKKA QDKKRGEAAS 120 STPTKPSSSV HSSISVSSKK HEVDPHVLFM ERVKRVATCL AHLHHHRGSI VMRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-30 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g02270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096687 | 1e-139 | BT096687.1 Soybean clone JCVI-FLGm-21E3 unknown mRNA. | |||
GenBank | BT097611 | 1e-139 | BT097611.1 Soybean clone JCVI-FLGm-16C12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497919.1 | 1e-104 | transcription factor MYB48 | ||||
Swissprot | Q4JL84 | 9e-73 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A1S3TVX4 | 1e-103 | A0A1S3TVX4_VIGRR; transcription factor MYB48 | ||||
STRING | XP_007150291.1 | 4e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-74 | myb domain protein 59 |
Publications ? help Back to Top | |||
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