PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 810aa    MW: 89674.9 Da    PI: 7.9062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07710759147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Vradi04g02000.1 710 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 759
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.4E-7513603IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.565705764IPR017930Myb domain
SMARTSM007172.0E-7709762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10710760IPR009057Homeodomain-like
SuperFamilySSF466891.7E-15711792IPR009057Homeodomain-like
CDDcd116602.61E-17711761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MKCEELASFT MLQTRSGHTI ERVPRVGIRL CIGPSNCVEP VFRCLIIDLL YPVPFLAITE  60
SSGHTDVRLY IETGGIKQRV EFKFIYQYWT ADVSCLINPY IGMVPLRYGV AEERNATFQR  120
LEEKQMCAFD LLATVADNLL QGKQNPTTCS DSSLEKDRDG FVKEECQDLN KPLKTELSDE  180
ASCDRRCQHD FVKEGCPDEN KPLKAELSDE GSSDRKCFSN ISSQVYNQNC CLKEFAVHEI  240
EGHSCIASIV TSSSCSEKFV AETLVDGKGQ NGTENLASKI ELGSSGSPES IGFKLDGDVS  300
KVKDVQFGKA PMDTGTGLCC SEDHLDEKPP ALVSSCCNAK LSGYDDSMPH SSLSKGCDNV  360
LVDSRDDDEN FSGCAHPSTK IKSSRPITCI DDRKINKRLA SKYLKVAQES KPDKLSNSVI  420
CFSIGNVLVL DGNLKPVYSN RKNYYKSQRS EMNIPFKKRK LFKCSDTNSN GYIRSGDTYF  480
SLKNETNQSV SYSPSGMSKD HGTSSLGHSA LRSRDSHVKL RIKSFRVPEL FIEIPETATI  540
GSLKRTVMEA VTAVLGGGLR VGVILHGKKV RDDSKTLLQT GISRDNHLDA LGFALEPNFS  600
QNLPPACATN SLRVPTADVP QPFIGYPSIP AVIHQRIQGF SSMLAEHQAT GLGNLVESDH  660
DSAPSPINTS GEKKISDSKE LIPEMGMEAL AVLPGHQKSK RTEIAQRRIR RPFSVAEVEA  720
LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL  780
DRVLIAHAYW SQQQTKQQLK HHSKPCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-576948001107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498079.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_014498080.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_014498081.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-123TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1S3TWD10.0A0A1S3TWD1_VIGRR; telomere repeat-binding protein 5 isoform X1
STRINGXP_007150334.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-102TRF-like 2