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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vradi04g01740.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MYB |
| Protein Properties |
Length: 313aa MW: 35451.4 Da PI: 5.6051 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi04g01740.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+++ G g+W+ +ar g+ R++k+c++rw +yl
Vradi04g01740.1 16 KGLWSPEEDEKLINYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 48 | 2.9e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E++l+++ + lG++ W+ Ia++++ gRt++++k++w++
Vradi04g01740.1 69 RGAFSPQEEQLIIHFHSFLGNR-WSQIAARLP-GRTDNEIKNFWNS 112
89********************.*********.***********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MRKPELCSGK DSKFRKGLWS PEEDEKLINY MLNNGQGCWS DVARNAGLQR CGKSCRLRWI 60
NYLRPDLKRG AFSPQEEQLI IHFHSFLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN 120
MSTTTASTSP NSSETSSEPS NKDLNMGGFM PTQHHQHATF VPVFGSSQTQ SMQTTVFNTM 180
IERLDHELNM PHVGEYLEGT GPCFSQNEAH NKSSYLDNGV FGSVNIGVEG DMFVPPLENL 240
NTSNNHNLSS TCKRETNSSY FDDINSILNN CNIGISSENK EEVENLFQQD AEWDFEELMK 300
DVSSFPFVDF SF*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
