PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 110aa    MW: 12593.1 Da    PI: 5.7252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.9e-0714751455
                     HHHHHHHHHHHCTSCC.C.....................TTS-.STCHHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPk.as..................kapskK.lsKaeiLekAveYIksLq 55
                     ++iN+  ++L+ llP+ +                   + ++k   s +eiL++++ +I+ Lq
  Vradi04g01350.1 14 NEINDLVSRLQLLLPQiNQrdnsrvcpsapfsfsytaSSHDKTyQSASEILKETCCHIRRLQ 75
                     68**************888*****************95555556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.89E-61492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-81491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSGRRSRASK FSQNEINDLV SRLQLLLPQI NQRDNSRVCP SAPFSFSYTA SSHDKTYQSA  60
SEILKETCCH IRRLQEEVEQ LSEKLSELMD SVDMNDIDRQ ILQNILQQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-76AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140557.14e-49hypothetical protein PHAVU_008G122600g
TrEMBLA0A0L9U5C88e-50A0A0L9U5C8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RUW58e-50A0A0S3RUW5_PHAAN; Uncharacterized protein
STRINGXP_007140557.12e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-16bHLH family protein