PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g00390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 307aa    MW: 34460.3 Da    PI: 7.2822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g00390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000125678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Vradi04g00390.1 56 YSCTFCTREFRSAQALGGHMNVH 78
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.37E-65382No hitNo description
SMARTSM003550.00975678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1365683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEGQCLMRS KRKYSLSSSL HGSSTDYPSY DDHSWEEQAF AKDAAWSGCV WPPRSYSCTF  60
CTREFRSAQA LGGHMNVHRR DRARLKQPHS PQNEILNYDP EKTQAQNSVQ ISFTSLGYLY  120
PPSITGLPHN TNPNSDPYSH VVASPSKVLG APVNKRCREK PQIPQYNSSS IFKGCHESPP  180
SLSSKSWPNL TDDFRFCSSR LDLEASVETK LQGLDSGCRS EGDKGKTEVA VSMNLFMSRA  240
HPVVQFENKE TDTSFKKRKS DTSSIPFFPK SCSVDKDHVQ SEMFDFSPSS IEELDLELRL  300
GHRSEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-125178229superman protein
2l1o_A6e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g00390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497495.20.0probable transcriptional regulator RABBIT EARS isoform X1
RefseqXP_022635285.10.0probable transcriptional regulator RABBIT EARS isoform X2
TrEMBLA0A1S3TUS00.0A0A1S3TUS0_VIGRR; probable transcriptional regulator RABBIT EARS isoform X1
TrEMBLA0A3Q0EU760.0A0A3Q0EU76_VIGRR; probable transcriptional regulator RABBIT EARS isoform X2
STRINGXP_007140494.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-25zinc-finger protein 10