PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0401s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 367aa    MW: 40272.6 Da    PI: 8.25
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0401s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29201259259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrC++   Cpv+k+v+r+ +d++v+++tYeg+Hnh+
  Vradi0401s00040.1 201 GDGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKQVQRCFKDETVLITTYEGSHNHP 259
                        69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-31185261IPR003657WRKY domain
SuperFamilySSF1182901.26E-26193261IPR003657WRKY domain
PROSITE profilePS5081128.747195261IPR003657WRKY domain
SMARTSM007743.3E-33200260IPR003657WRKY domain
PfamPF031061.5E-25202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEKSSLKNL LKDEERPYDC NTTDEPSLHN TMGSSVLSLS LNNTGQPFNQ MGMLRIKLEE  60
AKKENEILKA MLTQVNEHCT VLQNRILFEM QQNQLSSSVI NKNNNHESQG KIQDVEKPML  120
HTRQFLNIGD CSSLSEGYTE KVEKKILGRS LACEKNNIVE GEMNTKIALH EAKCIEDQAS  180
EVTCRRAKVS IRARSDFSLM GDGCQWRKYG QKTAKGNPCP RAYYRCSMGT ACPVRKQVQR  240
CFKDETVLIT TYEGSHNHPL PTAARSLASS TSAALNMFLS GSLSSSVGTT TLPNSPLFSS  300
SLSSVSPTAA ITKDPSLKAA LFSAISSLTG DSQKNSNNRT PNTGYDPCSK MPAILPPHHP  360
CSTELI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21187261174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0401s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-133AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521778.10.0WRKY transcription factor 6
TrEMBLA0A1S3VTR90.0A0A1S3VTR9_VIGRR; WRKY transcription factor 6
STRINGXP_007138579.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-49WRKY family protein