PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g10130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 273aa    MW: 30397.8 Da    PI: 8.8193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g10130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-1486132354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  Vradi03g10130.1  86 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 132
                      79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.50483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1186132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-1086135No hitNo description
SuperFamilySSF474595.37E-1386135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1586135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00311179214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGDKRLRNHG RNFRMVSNVT MENYYDSGWH MSTSWAQCSD HSSSFAVPTQ ILPHVTDSAS  60
LQFGEFHSWP LPIEGAEEER AMSASKSHSQ AEKRRRDRIN AQLATLRKLI PKSDKMDKAA  120
LLGSVIDHVK DLKRKAMDVS RAFTVPTEID EVSIDCDHVE DESCTKVNKL KENIVIKASV  180
CCDDRPELFP ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDSEEGV CLTTLKQSLK  240
SAVTKIASSS MTSNCPTRSK RQRFFLPSRC LQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g10130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894760.0BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494911.10.0transcription factor bHLH51
TrEMBLA0A1S3TMA70.0A0A1S3TMA7_VIGRR; transcription factor bHLH51
STRINGXP_007163561.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-49bHLH family protein