PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g09710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 491aa    MW: 54500.1 Da    PI: 8.5724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g09710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.27.9e-24149205259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk ++ +++ + v+ei+Y+++H h+
  Vradi03g09710.1 149 SDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCSAKK-IKFCDHSGYVIEIVYKSQHSHD 205
                      7********************************98.999999***************7 PP
2WRKY92.43.3e-29358415259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vkg+++ r+YYrCtsagCpv+k++e++ ++ k+v+itY+g H+h+
  Vradi03g09710.1 358 SDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNAKAVIITYKGVHDHD 415
                      7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-21142207IPR003657WRKY domain
PROSITE profilePS5081117.637143207IPR003657WRKY domain
SuperFamilySSF1182904.05E-20146207IPR003657WRKY domain
SMARTSM007747.1E-22148206IPR003657WRKY domain
PfamPF031061.5E-17150205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30342417IPR003657WRKY domain
PROSITE profilePS5081131.009352417IPR003657WRKY domain
SuperFamilySSF1182908.76E-26352417IPR003657WRKY domain
SMARTSM007747.2E-33357416IPR003657WRKY domain
PfamPF031061.8E-22359414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEEEEAMQQP LTDSSLTTHS LTSDEEQLHS ETLSLHSSAH MQRSSTASEL GQDESKESAQ  60
HSDEETIVKE TVEAPQKQTE NQLQMSVCST SSSKLSPTSV SQYLSSAPSS SVPQQRPSPK  120
AVKVQKRDKG TPSGDTTLSS VSVSRSSASD GYNWRKYGQK QVKSPTGSRS YYRCTHSNCS  180
AKKIKFCDHS GYVIEIVYKS QHSHDPPHIV DSTKESKFLP YGEPKIKYSV PKQSSRVQID  240
SDPSSPKKPL YESPCSANKN QENSSYDEND KVLLKKEHVN DPEPKRRQVA YELIFFIGNL  300
RNLLFFLYMW LDVMSNALVL NMITRLNKGD LTCLDSAIKP GKKPKFVVHA AEDMGISSDG  360
YRWRKYGQKL VKGNPHFRNY YRCTSAGCPV RKHIETAVDN AKAVIITYKG VHDHDMPVPK  420
KRQGPPRASL VAAAAPASMK NLHFKKSGLV QKQETSSAQC SEDTEDEALD LGGEKAIESA  480
RTLLSIGFEI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-25345417274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g09710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495174.10.0probable WRKY transcription factor 32
TrEMBLA0A1S3TN310.0A0A1S3TN31_VIGRR; probable WRKY transcription factor 32
STRINGXP_007138279.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-95WRKY DNA-binding protein 32