PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g08650.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 297aa    MW: 34406.2 Da    PI: 9.0127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g08650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-082671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ eE +++ +a + + ++   +W ++a++++ gR+ ++++  ++ 
  Vradi03g08650.1 26 EWSREENKQFEHALAIYDKDtpdRWLRVAAMLP-GRSVYDVIKQYRE 71
                     6********************************.********99986 PP
2Myb_DNA-binding40.85e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r++  ++t+ q+ s+ qky
  Vradi03g08650.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKY 170
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.032277IPR017884SANT domain
SMARTSM007171.7E-82375IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-112679IPR009057Homeodomain-like
CDDcd001679.02E-72672No hitNo description
PfamPF002491.9E-62671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10117171IPR009057Homeodomain-like
PROSITE profilePS5129419.139119175IPR017930Myb domain
SuperFamilySSF466896.58E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16122174IPR006447Myb domain, plants
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
PfamPF002494.0E-11126170IPR001005SANT/Myb domain
CDDcd001672.22E-8126170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFETPYPTC FMSNSNWFVQ EGHYTEWSRE ENKQFEHALA IYDKDTPDRW LRVAAMLPGR  60
SVYDVIKQYR ELEEDVSEIE AGRIPIPGYV TSSFSLEMVD NHCYDACRKK PATVRSSDQE  120
KKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRKFVITKTP TQVASHAQKY YIRQKLSGGK  180
YNKRRPSIHD ITIVNLTTDQ GKFNESHVPS EKLKLNSMPK VQLEWINRHN NIGSLMDFNP  240
NYMLMSPSSG IVSPKTLKLQ GLDFYECAFH KTYAKLKNPD FNKEAIFGIQ ALSCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-182297681RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g08650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495343.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-79DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3TNJ40.0A0A1S3TNJ4_VIGRR; transcription factor DIVARICATA
STRINGXP_007163513.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]