PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g08040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 338aa    MW: 37798.4 Da    PI: 9.2088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g08040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-10252293955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Vradi03g08040.1 252 AKNRRERISERLKILQELVPNG-----SKVDMVTMLEKAISYVKFLQ 293
                      69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-12242300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14242303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-11245297No hitNo description
SMARTSM003535.2E-12249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALAKDQNIP HDSTMSSKVP NCVFSEAVET TSVTVRRVNE YHKSVIEEED GSQTTNGLSN  60
DSGITHSPPL SGSGKGYTYK EKSYQLGEEE SLINFKGYSN LMQAGESLLS FQHNRLVPNS  120
CYSKDISQKE YCSWENSLHQ GHNHWNQHSP RSNKDMRLVQ DSNCFQTASG YSSMVDNAKE  180
KQYGERSSGW LYSAPTIPND KSLHKLGARE MVLQKRPSMG ESMKAAKKQC STESKTLKHK  240
SSPSKDPQSV AAKNRRERIS ERLKILQELV PNGSKVDMVT MLEKAISYVK FLQLQVKVLA  300
TDEFWPAQGG KPPDISQVKE VIDAIRSSQR ERSLNSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g08040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634715.10.0putative transcription factor bHLH086
TrEMBLA0A3Q0ESM60.0A0A3Q0ESM6_VIGRR; putative transcription factor bHLH086
STRINGXP_007163398.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.13e-62RHD SIX-LIKE 1