PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06940.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 541aa    MW: 58329.3 Da    PI: 6.9967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30309367259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ ed++v+++tYeg+Hnh+
  Vradi03g06940.1 309 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCVEDKTVLITTYEGNHNHP 367
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-33293369IPR003657WRKY domain
SuperFamilySSF1182901.7E-27301369IPR003657WRKY domain
PROSITE profilePS5081129.849303369IPR003657WRKY domain
SMARTSM007742.5E-36308368IPR003657WRKY domain
PfamPF031064.4E-26310367IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MTSWLPSKSV GLGFPILWVP LIPTTVDDRK SRAVNWVDLM GLPHVDPSAG DFLNPPSDHT  60
TRNTDPPIKE MDFFSSSPSS PATHHHHNHV GLQDHTHRQG SPPHVSHHPV NTGLNLTCAS  120
TGFTKEENDE NHEAELSSIE SQLRRLQEEN RKLRTVLDQI TRSYTQLQAQ LFITLQKQKL  180
PQNTEANGTV SEQKNVDPAG VCRKLEVVNE ASVCDEKTDG EVSVCRSNNV EVLSKTDDDE  240
APQLIKLNLG KQACPDAADD VLDRSSSQSW GSSKLEEQPK TAEQVSADQI PLRKARVSVR  300
ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCV EDKTVLITTY  360
EGNHNHPLPP TATAMASTTS AAAAMLLSGS TASKEALTNS AGYYSSLPYA SMATLSASAP  420
FPTITLDLTQ NPNAIHLHRV PPHATTFPLP LHASGGHQFL GHPLFFSQKL PPAASSLLHA  480
RQTSSMVETV SAAIASDPNF TSALAAAISS IIGIPSNNNG TSGAIGSPQL PQSCTTFSTN  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-22298369777Probable WRKY transcription factor 4
2lex_A6e-22298369777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495356.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A1S3TNM30.0A0A1S3TNM3_VIGRR; probable WRKY transcription factor 47 isoform X1
STRINGXP_007163249.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-74WRKY family protein