PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 263aa    MW: 30105.7 Da    PI: 5.8738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-171661148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd ll ++v+ +G g+W+++ar++   R++k+c++rw++yl
  Vradi03g06710.1 16 KGPWSVEEDTLLQNYVATHGDGRWNSVARCLK--RSGKSCRLRWLNYL 61
                     79*****************************7..************97 PP
2Myb_DNA-binding47.73.5e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+  +++++ ++G++ W++Iar+++ gRt++++k++w++
  Vradi03g06710.1  67 RGNITLQEQITILELHSRWGNR-WSKIARHLP-GRTDNEIKNYWRT 110
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4371161IPR017930Myb domain
SuperFamilySSF466892.28E-2814108IPR009057Homeodomain-like
SMARTSM007171.8E-151563IPR001005SANT/Myb domain
PfamPF002493.4E-161661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-221768IPR009057Homeodomain-like
CDDcd001677.24E-121861No hitNo description
PROSITE profilePS5129422.29962116IPR017930Myb domain
SMARTSM007174.3E-1366114IPR001005SANT/Myb domain
PfamPF002491.7E-1367110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2169113IPR009057Homeodomain-like
CDDcd001671.19E-971110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKKRSAEEVN SEDTRKGPWS VEEDTLLQNY VATHGDGRWN SVARCLKRSG KSCRLRWLNY  60
LRPDVRRGNI TLQEQITILE LHSRWGNRWS KIARHLPGRT DNEIKNYWRT RVLKQARNLK  120
CDVDSEQFKD ALRYVWMPRL IERIQPSSET HDPPDVSPSE LYPSPTPSLH HQNGLHGLCS  180
GSNALDLSSA KLEAPLESED MGHNNVSVPG VCENMNDRDL EQGNITLPFA GGDSMESLWD  240
DENLWLMQQL CDDLEIKDNF LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-241610827120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495060.10.0transcription factor JAMYB-like
SwissprotQ10MB43e-76MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S3TMQ80.0A0A1S3TMQ8_VIGRR; transcription factor JAMYB-like
STRINGXP_007163207.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.18e-74myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]