PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi03g06620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 416aa MW: 47530.9 Da PI: 8.2648 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.5 | 6.4e-34 | 282 | 339 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+ Vradi03g06620.1 282 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHP 339 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-34 | 266 | 341 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-29 | 273 | 341 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.892 | 276 | 341 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-41 | 281 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 282 | 339 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MPPAATLSVP PTNLQLPVAY LVSLFLALTM EHMYVCIHIR SLLLASFTSN SFPQSPFTFF 60 QPTKPRYLSI SIYLSFFSFF LSSFIHLTRS IDPIIYLSYL SHCSCSCLNE GFQIGHLRDK 120 YIYMDNNKEM MTMMMMGVKK KEDYAIGSSS FHCNYPFLDF SDDKGSLGFM ELLGVQEYSP 180 LLDLPLGSNM EVPQTSDLKE PPQTKKDWTE VTNQQPATPN SSSISSASSE ALNDEQKNRT 240 VDQTHDEHKK TKEQLKAKKT NQKRQREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF 300 PRSYYRCTSV SCNVKKRVER SFSDPSIVVT TYEGQHTHPS PVMGRSNNFG TLMSGSENYM 360 SQYYQQHHQQ QLHVDALSSL SFLSPKNVTF PQQTALLSDY GRLQDVVPSH IFKQD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 274 | 341 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 274 | 341 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi03g06620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495886.2 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 2e-57 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1S3TQ51 | 0.0 | A0A1S3TQ51_VIGRR; probable WRKY transcription factor 23 | ||||
STRING | XP_007163195.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-52 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|