PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g05810.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 503aa    MW: 55247.8 Da    PI: 8.5344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g05810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Vradi03g05810.1 62 FVCEICNKGFQRDQNLQLHRRGH 84
                     89*******************88 PP
2zf-C2H216.22.9e-05138160123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H++t+
  Vradi03g05810.1 138 WKCDKCSKRYAVQSDWKAHQKTC 160
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-86184No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-56284IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035567103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-6126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.5E-8133159No hitNo description
SMARTSM0035589138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAKKFLIRIL CIPLLFVKCF ICSVFRSSMV SYYLLMDMFY EIDPSAEVVA LSPTTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSTEVKK RVYVCPEPSC VHHNPGRALG  120
DLTGIKKHYS RKHGEKKWKC DKCSKRYAVQ SDWKAHQKTC GTREYKCDCG TIFSRRDSFI  180
THRAFCDALT EENNRVNQGL TSGMPPNLQN QIPDLMSTMP LNTSPNTAYD PKNPLKSLPQ  240
ELVPIPFKSM SMGGGMFSTN AGALFGGPKS MSPSSSSLQL GSNTSSSFNY LQDNKNGGLI  300
AASAQMSATA LLQKAAQMGA TASNTINSPM MQKGFVSSTA APDHVSSTRP PYSGAMLQHN  360
NSYDHFSPQP DLSNMAGVSG GGAFINQLFH KGQEISQVFD TNTAVSAMND VGMFSQMPLG  420
SDHNPGLMKN VEQEASNCSG LIHGKDVVEG NPMQASRFGG SDMTTVHDFL GIGGSTSRVM  480
NHFHHHFPHE DSSAMEEPIW DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35134197366Zinc finger protein JACKDAW
5b3h_F1e-35134197366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g05810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418855.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-105IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0L9UAE70.0A0A0L9UAE7_PHAAN; Uncharacterized protein
STRINGXP_007163083.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]