PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g03240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 33420.2 Da PI: 9.9684 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.8e-14 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE++++++a +++ + Wk+I +g +t q++s+ qky Vradi03g03240.1 26 RESWSEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 70 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.41E-17 | 20 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.849 | 21 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 24 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-18 | 24 | 73 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-11 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-11 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-9 | 28 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAMAPSTPSS GSGKKVRKPY TITKSRESWS EEEHDKFLEA LQLFDRDWKK IEDFVGSKTV 60 IQIRSHAQKY FLKVQKNGTV AHVPPPRPKR KAAHPYPQKE SKNVLVPLPA SLAYVSPTWD 120 ENFLLMNSGS NRSLPYLDEL TNLHGDEGMR VSFYSFIFLV RLFSDIGSKG VTIIGNSCVS 180 DVGNSTTKLS ATEIPKQGKQ TQVLHGLPDF AEVYSFIGSI FDPDTKGHVQ KLKEMDPINF 240 ETVLLLMKNL TLNLSSPDFV PVRNAMSSYD ANTALRQELM SRNRQRIYNV KQLNKH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g03240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-79 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495340.1 | 0.0 | protein REVEILLE 8 isoform X1 | ||||
Swissprot | Q8RWU3 | 1e-114 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A1S3TNG9 | 0.0 | A0A1S3TNG9_VIGRR; protein REVEILLE 8 isoform X1 | ||||
STRING | XP_007162715.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6735 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 9e-92 | MYB_related family protein |
Publications ? help Back to Top | |||
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