PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g03190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 493aa    MW: 54202.2 Da    PI: 8.3529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g03190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32196251359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  Vradi03g03190.1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHL 251
                      9***************************************.***************5 PP
2WRKY102.32.9e-32411468259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dp+ +++tYeg+Hnh+
  Vradi03g03190.1 411 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHD 468
                      5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28182253IPR003657WRKY domain
SuperFamilySSF1182905.36E-25193253IPR003657WRKY domain
SMARTSM007741.3E-36194252IPR003657WRKY domain
PfamPF031062.2E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.433196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-33396470IPR003657WRKY domain
SuperFamilySSF1182902.09E-28403470IPR003657WRKY domain
PROSITE profilePS5081134.612405470IPR003657WRKY domain
SMARTSM007744.9E-38410469IPR003657WRKY domain
PfamPF031062.5E-25412468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVASRPT CSTFKSFSEL LAGAINVSPD ISSSQATVSA IRPKTVRFKP  60
AALNHPHAGF DSCQADTFGA ALSNSSDKIP KLDNNQSLIY KPTAKLVSKT TVSLLANMKG  120
NCSTGQQQTR QLMEANFQHS INEKFRSSMS SHLDQSIARH TEINEISEAS KMVQQNTEED  180
QKTLTSSANC DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSFDGQIA  240
EIVYKGEHNH LKPQLPKRST ATGTQGSGVL SDGMVQDVWS NSHSERNEGN ESRVENAGGG  300
LSVLSDYYVK LPQPNDSGLN IGATNAGGGS TENSCGLSGE CEEGSKGFEA QEDEPRSKRR  360
TSFLCILSNN SNCSSSSMKN ENLSNEVALS EEGLVEPRIV MQSFTDSEIL GDGFRWRKYG  420
QKVVKGNPYP RSYYRCTNVK CNVRKHVERA IDDPRSFVTT YEGKHNHDMP LKNTGNVASE  480
RDSQASLCKD KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-32196470877Probable WRKY transcription factor 4
2lex_A8e-32196470877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g03190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634904.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A3Q0EWT90.0A0A3Q0EWT9_VIGRR; WRKY transcription factor 44 isoform X1
STRINGXP_007162709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-107WRKY family protein