PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02820.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 355aa    MW: 38853 Da    PI: 9.8244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.22e-15185231455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Vradi03g02820.1 185 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAISYLKSLQ 231
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.0E-20178240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-19179242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.974181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-16184235No hitNo description
PfamPF000106.3E-13185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MQTLATSQLT DHRPMSAPPR PPIPLPGRLE PKTPNFAYFS RHNTRAAEES VKAAAKESTV  60
VDSCETPAAT AAAVSRVSET VRNASEPREG GAGGPVPSTS AGNGRSTMIL QISYTLAFAI  120
VRRVGDVGLR EHSPYCCIHF GAVIVRSSDT VTFTVAAAHD VDFESEAKKQ VRGSTSTKRS  180
RAAEVHNLSE RRRRDRINEK MRALQELIPR CNKSDKASML DEAISYLKSL QLQVQSMLSS  240
CIAFMQHVLL PMHHLPVLAT AAAHLGPRFP MPPFHMPRVP SPDSSRMQAE NQSDKNMVAA  300
GPPDPNQSRL PNFTDPYQQY PGPHQMQFQV IQNQAMNQSN VGKPSTSRDN PENR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-148AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634888.11e-176transcription factor PIF1 isoform X3
TrEMBLA0A3Q0ET181e-175A0A3Q0ET18_VIGRR; transcription factor PIF1 isoform X3
STRINGXP_007162650.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-28phytochrome interacting factor 3-like 5