PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 644aa    MW: 71217.9 Da    PI: 5.8993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144705071355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Vradi03g01510.1 470 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHMLFLQ 507
                      67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000830.00118450507No hitNo description
PROSITE profilePS5088810.925457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4470511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-5470511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MSYHAYSLGE GFFLHSIVGQ VAVTGKHRWI CADNQVAGSG LSFEFADGWQ SQFSAGIRVI  60
EDTGFVAHIR NLFQNCSMAQ CPSQIQGSLK SSLSQLDISK ENLSSDVMPT GFYNPQKSMK  120
SETADVLMSL QCSGRNYALH SACQKMTDNV AKQEGPELYS DESSILLQSI SNMMNVEHHD  180
FEEMKALYGR KCEEGSSGCK DLRLESENNV SSFLSDFITD NDLICPSEKF RVDSACFPSA  240
FLDTVVCETD KLHCVDNNQK GVLNFTQPSD ANSQYVEKSK FHTEPSYNDM SNVLNFPAGC  300
ELHEALGPSF LKGSKSFDWA AQFNQDMKTV EMSDEISTSQ LTSESRPEHL LEALVANICH  360
SNNDVNSELS FCTSMQSAMA SGKNHEASTH NVYAINSEGY SIDQFSLVKE DKHHSLSSSS  420
GICGVMSSKG VSSTFPSSSS GQLERSSEPS KNSKKRARPG ESCRPRPRDR QLIQDRIKEL  480
RELVPNGAKC SIDSLLERAI KHMLFLQSIT KHADKLTDFG DTKSKLHHME ADIIGSSSYE  540
QGSSWAMEVG GHLKVHSILV ENLSKNGQML VEMLCEECSH FLEIAEAIRS LGLTILKGGT  600
KVHGEKIWIC FVVEGQNNRN VHRLDILWPL VQILQSKSTV YSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634828.10.0transcription factor bHLH155 isoform X2
TrEMBLA0A3Q0ESV70.0A0A3Q0ESV7_VIGRR; transcription factor bHLH155 isoform X2
STRINGXP_007162528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-106conserved peptide upstream open reading frame 7