PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 293aa    MW: 31200.4 Da    PI: 6.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10141185554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Vradi03g01220.1 141 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 185
                      99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNPSDAPA DDFLEQILGL PTFASGDSGL ASADVGLSGT TSPAPMMLQL NSADANAHLT  60
GAAFHAPVYQ LGLSLDQGKG GFMKPEEASA SGKRYRDDVV DGRAKNVFHG QPMPTTMPTA  120
PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD  180
YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGG EGARNRPAWD KLSNDGTERQ  240
VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPPDS SSIVKPETNP PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-164AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496302.10.0transcription factor UNE12
SwissprotO227681e-131UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3TRF20.0A0A1S3TRF2_VIGRR; transcription factor UNE12
STRINGGLYMA19G34360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]