PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0393s00030.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

DBB

Protein Properties

Length: 222aa MW: 25210.8 Da PI: 7.4343

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0393s00030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.2	1.2e-06	4	32	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC C ++ H Vradi0393s00030.1 4 LCDVCESAAAILFCAADEAALCSACDQK-H 32 7*************************98.7 PP
2	zf-B_box	28.6	2.9e-09	61	100	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Vradi0393s00030.1 61 VPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHE 100 689**************************99966666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.314	1	32	IPR000315	B-box-type zinc finger
SMART	SM00336	0.13	1	36	IPR000315	B-box-type zinc finger
CDD	cd00021	1.15E-4	3	30	No hit	No description
SuperFamily	SSF57845	9.84E-5	58	95	No hit	No description
PROSITE profile	PS50119	9.343	59	104	IPR000315	B-box-type zinc finger
SMART	SM00336	3.4E-10	59	104	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-7	61	100	IPR000315	B-box-type zinc finger
CDD	cd00021	2.84E-7	62	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCSACDQ KHLFALEIQI HMCNKLASRH IRVGLADPTD 60 VPRCDICENA PAFFYCEVDG SSLCLQCDMI VHVGGKRTHE RYLLLRQRVE FPGDKPAQME 120 ELGLQPLDQN EFRRDENQFL KLKSRDSQQN HSILPVPRQE NNIDGHRKLD KKLIDLNTRP 180 LRLNGPAPNN QTKSMRGNSY FHTNEMHNEG RLKSLVYTKF S*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0393s00030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092206	1e-166	BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432413.1	1e-153	PREDICTED: B-box zinc finger protein 18 isoform X1
Swissprot	Q9SJU5	3e-69	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A4D6LJA2	1e-143	A0A4D6LJA2_VIGUN; Zinc finger protein CONSTANS
STRING	XP_007131751.1	1e-124	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21320.1	1e-71	DBB family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]