PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0388s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 658aa    MW: 73628.9 Da    PI: 6.3634
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0388s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.7e-24116216198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  Vradi0388s00010.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 205
                        99****************************9555555679************************************************..44 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                        s++el+v+v+r
  Vradi0388s00010.1 206 SNGELRVGVRR 216
                        9999*****98 PP
2Auxin_resp912.1e-30242323183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k+ +GmR+km++e++ds e+    sGt++gv+d++p +W nSkWrsLk
  Vradi0388s00010.1 242 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNIGMRLKMRLEGDDSTETDKriSGTIIGVEDISP-HWVNSKWRSLK 323
                        789***************6..9********************************9864444**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-39107245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-39109231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-20114216No hitNo description
PROSITE profilePS5086312.238116218IPR003340B3 DNA binding domain
PfamPF023622.3E-22116216IPR003340B3 DNA binding domain
SMARTSM010195.2E-22116218IPR003340B3 DNA binding domain
PfamPF065078.9E-29242323IPR010525Auxin response factor
PfamPF023093.1E-9519634IPR033389AUX/IAA domain
PROSITE profilePS5174520.954547628IPR000270PB1 domain
SuperFamilySSF542774.71E-11550623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MSLHRGEGDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK  60
LPSEILCRVV NVHLLAEPET DEVYAQITLV PENNQTEPTS PDPCPSEVPR PRVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QSSMPSSVIS SQSMHLGVLA  240
TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNI GMRLKMRLEG DDSTETDKRI  300
SGTIIGVEDI SPHWVNSKWR SLKVQWDETP SFPRPDRVSP WEIEPILASV PTPISSQSVA  360
LKNKRPRQAT EVPDLGDTTL IAPTFWDPGL TQSDITQLGV IAESKRSEST AHMWHHNNNN  420
SSNISMNQRK ASWLSSPSHL YLDTSDDSKS ISASPISKIH AERLNNDHCL DQVDKEISNV  480
EPTTGCRLFG IDLIDHTRSN SLSVDNASAV TSEGRTDANH ESDISKASKE WKQEQLQVSP  540
KETQNKQICS RSCTKGVAVG RAVDLTTLDG YEQLVDELEK MFDIKGQLQR RNKWEIVFTD  600
DEGDMMLVGD DPWPEFCNMV RRIFICSSQD VHKLSSGSKL PISSMEETVI SSDTAET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-162934617355Auxin response factor 1
4ldw_A1e-162934617355Auxin response factor 1
4ldw_B1e-162934617355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0388s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523729.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3W0C20.0A0A1S3W0C2_VIGRR; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9