 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi0381s00020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MYB |
| Protein Properties |
Length: 393aa MW: 43654.7 Da PI: 6.6239 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi0381s00020.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 3 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed l+d+v+++G g+W+++ r g++R++k+c++rw ++l
Vradi0381s00020.1 3 KGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 50
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 56 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqk 46
+g++++eE++l+++++ q+G++ W++ a+ + gRt++++k++w++
Vradi0381s00020.1 56 KGAFSPEEEKLIIELHSQFGNK-WARMAALILnsvslvaaatqlPGRTDNEIKNYWNT 112
799*******************.8888888888888888888899***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
LKKGPWTAAE DAVLIDYVTK HGEGNWNAVQ RNTGLNRCGK SCRLRWANHL RPNLKKGAFS 60
PEEEKLIIEL HSQFGNKWAR MAALILNSVS LVAAATQLPG RTDNEIKNYW NTRIKRRQRQ 120
DQSPLPLSSS SPSSLSFTFQ RPEPLLCTPL RFKRYRASSS YNPLPDLPLT TQFPHLDAFR 180
FPVSSGFSPF FQPSFVESDR GISSSSSFQP KLDLPSSQFY KPPQEQDIKL DIDFNDPSFQ 240
TRSGLLGGLL LEAQALASGQ NSKKRPHLSL NEGNDFFDAC QSFEDFPSSS LYWPSSASAA 300
KAKEEAPDLS KFTNEELSSL LTVFPSSNTE GHDWLNNGDQ EGLNVQPCGS GMTDDNFGVD 360
IKPVASLFPL TNTTNHNENQ GCYPWDNLPG LC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
