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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi0374s00040.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
TCP |
| Protein Properties |
Length: 238aa MW: 26192.1 Da PI: 5.2831 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi0374s00040.1 | genome | SNU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 123 | 3.4e-38 | 98 | 199 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssg.. 88
+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s + +c+ ++s+ s++n+s +
Vradi0374s00040.1 98 AKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSisggDKCSGDASVDSNNNKSLAgn 189
79*************************************************************55555444566755566665555554445 PP
TCP 89 .........k 89
Vradi0374s00040.1 190 wdtngaftgY 199
5555555550 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MFSSTYDSNL FPNFPSSSYP ILPFLIDPEN DFASNTLFDD PLLVPFTPIT HDPPFPEETV 60
ANFAVADCTA ILEQDANTNY GSHNGSMSNF LTQKPAIAKK DRHSKIHTSQ GLRDRRVRLS 120
SEIARKFFDL QDMLEFDKPS NTLEWLFTKS ENAIKELAQS KHSGSISGGD KCSGDASVDS 180
NNNKSLAGNW DTNGAFTGYS NFCAIGTMNL STCFMNPCFP DSSKAKQKST TYFTKAL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269|PubMed:16236768, ECO:0000269|PubMed:8893002}. |
| UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Vieira CP,Vieira J,Charlesworth D
Evolution of the cycloidea gene family in Antirrhinum and Misopates.
Mol. Biol. Evol., 1999. 16(11): p. 1474-83
[PMID:10555278] - Gubitz T,Caldwell A,Hudson A
Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives.
Mol. Biol. Evol., 2003. 20(9): p. 1537-44
[PMID:12832647] - Reeves PA,Olmstead RG
Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution.
Mol. Biol. Evol., 2003. 20(12): p. 1997-2009
[PMID:12885953] - Costa MM,Fox S,Hanna AI,Baxter C,Coen E
Evolution of regulatory interactions controlling floral asymmetry.
Development, 2005. 132(22): p. 5093-101
[PMID:16236768] - Luo D,Carpenter R,Vincent C,Copsey L,Coen E
Origin of floral asymmetry in Antirrhinum.
Nature, 1996. 383(6603): p. 794-9
[PMID:8893002]
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