PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0360s00120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 527aa    MW: 57649 Da    PI: 6.548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0360s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.11.5e-12016951313374
               GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                        s+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++kfsh+taNqaI e
  Vradi0360s00120.1 169 SAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFVKFSHFTANQAIQE 256
                        689**********************************************999988885....89999************************* PP

               GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                        a+e+eervHiiD+di+qGlQWp L+  LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++e+L+v
  Vradi0360s00120.1 257 AFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFP-VAEKVGNLDPERLNV 343
                        *********************************************....***************************.7************** PP

               GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                        ++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++  ++sFl rf+ea++yysalfdsl +++++eseer++vE++
  Vradi0360s00120.1 344 SKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSN-NGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQ 428
                        ***********9..999999999999....*******************985.789************************************ PP

               GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        ll+rei+nv+a  g +r+ + + +++Wre+++++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  Vradi0360s00120.1 429 LLSREIRNVLAVGGPSRTGEPK-FHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 513
                        ****************998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.123132493IPR005202Transcription factor GRAS
PfamPF035145.3E-118169513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAAACALFTA GTNITEDGNV NNASGSAASP LTSASNSSNM SNDDQHTLHG IMPHPHCERK  60
MLRKRMASEM DHVNVHLTPP HNSSSTTDYP SSNSVSIPQL ISNVREIIYP CNPNLATILE  120
YRLRLLTESA PQNKRATEGV PLPPSVSSVK LVNNRVDGIV PNLHFTDASA ENLEDANKML  180
LEISQLSTPF GTSAQRVAAY FSEAISARLV SSCLGIYATL PHTHQSHKVA SAFQVFNGIS  240
PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FYILASRPGG APYVRLTGLG  300
TSMEALEATG KRLSDFANKL GLPFEFFPVA EKVGNLDPER LNVSKTEAVA VHWLQHSLYD  360
VTGSDTNTLW LLQRLAPKVV TVVEQDLSNN GSFLGRFVEA IHYYSALFDS LGSSYGEESE  420
ERHVVEQQLL SREIRNVLAV GGPSRTGEPK FHNWREKFQQ CGFRGISLAG NAATQASLLL  480
GMFPSEGYTL VEDNGILKLG WKDLCLLTAS AWRPPFHTGT AITHHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.016951431380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0360s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523233.10.0protein SCARECROW isoform X1
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A1S3VXZ40.0A0A1S3VXZ4_VIGRR; protein SCARECROW isoform X1
STRINGXP_007140014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein