PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0338s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 299aa    MW: 33225.4 Da    PI: 4.6818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0338s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.17e-081822172759
                        E-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  27 Ctsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        C+++   gC+++k+v+r+++ p++ ++tY g+H+++
  Vradi0338s00060.1 182 CSHRydkGCKATKQVQRDEQYPQMYQTTYIGSHTCN 217
                        88888789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.86E-2036137IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.8E-650124IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.0E-1451130IPR002182NB-ARC
SuperFamilySSF1182904.05E-7178217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-7179218IPR003657WRKY domain
PfamPF031064.9E-8181216IPR003657WRKY domain
SMARTSM007747.9E-6182218IPR003657WRKY domain
PROSITE profilePS508118.547182219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEQVIEDLED LANESYILGL EKGGGVGVGS GSSSKLTYTS LTNENVIYGR DDDKEFVFNW  60
LTSNTHNNLS ILSIVGMGGM GKTSLAQHVF XDPRLEGKFD TKVWVSVPQE FDVLKLSRAI  120
LDTITGSTDH SIPXNLKILS IIALDKHDND TTSPPTKFLN LDTTTLERSN QPTTNQHQHA  180
PCSHRYDKGC KATKQVQRDE QYPQMYQTTY IGSHTCNAIS EIVTNSTKDS STWESYLLNS  240
DHDSDVHDPL ISSPTLTVKQ EFPKESKTSS DLTDYKPFEP SLVSDLKDFE PFMPSIMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C8e-1347124160237Disease resistance RPP13-like protein 4
6j5t_F8e-1347124160237Disease resistance RPP13-like protein 4
6j5t_G8e-1347124160237Disease resistance RPP13-like protein 4
6j5t_L8e-1347124160237Disease resistance RPP13-like protein 4
6j5t_O8e-1347124160237Disease resistance RPP13-like protein 4
6j5u_A8e-1347124160237Disease resistance RPP13-like protein 4
6j5v_A8e-1347124160237Disease resistance RPP13-like protein 4
6j5w_A8e-1347124160237Disease resistance RPP13-like protein 4
6j6i_C8e-1347124160237Disease resistance RPP13-like protein 4
6j6i_F8e-1347124160237Disease resistance RPP13-like protein 4
6j6i_G8e-1347124160237Disease resistance RPP13-like protein 4
6j6i_L8e-1347124160237Disease resistance RPP13-like protein 4
6j6i_O8e-1347124160237Disease resistance RPP13-like protein 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0338s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-170AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-12WRKY DNA-binding protein 70