PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0328s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 610aa    MW: 68327.7 Da    PI: 6.6802
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0328s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094104471954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Vradi0328s00020.1 410 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 447
                        554459******************************88 PP
2BELL81.31.3e-262953491872
               BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +V++rY+qy++q+++vi sFe v glg+a+pY+slA +a+S+hF+cLk+ai++q+
  Vradi0328s00020.1 295 KVYRRYRQYYQQMHAVITSFEYVSGLGNAAPYASLAINAMSKHFKCLKNAITDQL 349
                        699*************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-28179347IPR006563POX domain
PfamPF075261.5E-33184346IPR006563POX domain
PROSITE profilePS5007112.131388451IPR001356Homeobox domain
SMARTSM003893.3E-10391455IPR001356Homeobox domain
CDDcd000867.26E-13391452No hitNo description
SuperFamilySSF466895.99E-17393458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-28394455IPR009057Homeodomain-like
PfamPF059201.5E-18408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAEGFEHYHV PQQSRRDKLR VFAQNHPSFV ESSSILHPTS PNLTSLYDPS LIPSDLLACA  60
TQQAAAAKGE GSNLMMGFVE GGVVNGDAIH VINSNSNHHN NNPFLYQLQN LREFGDGYND  120
ASEMMVFKPE PLSLSLSSQS NNTHHPLELN LQRFGAVIPG LVERNSEVSR NSVPLGPFTG  180
YASILKESRF LKPAQQLLEE LCDGGVREIY ATEKSLAPDA SLMEPPHEGL SATGVVGGDD  240
PLGDYENESR KKKCRLLTML DEMLVFGGID DLGELGYLFG KVIGREYMHE DWECKVYRRY  300
RQYYQQMHAV ITSFEYVSGL GNAAPYASLA INAMSKHFKC LKNAITDQLQ FINKAPFQIS  360
NRKDESPRLH NSDRGTYSQR PGFLEHQQPV WRPQRGLPER AVSVLRAWLF EHFLHPYPTD  420
TDKLMLAKQT GLSRNQVSNW FINARVRLWK PMVEEIHMLE SQQAQKRPQR EEQSRRNLSG  480
GDHLPSDNSL VTENIPSTSM EKFQDAHYKQ HRNEIANMQV RGQEQLNQTN TSNQQMGVGV  540
SINNGVSLTL GLHQNHGIGL SEPFGMSAAQ RFGVALQPEG YVISGFESQN RHFGRDVIGG  600
GQLLHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A9e-16397455159Homeobox protein Meis2
5bng_B9e-16397455159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0328s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493160.10.0BEL1-like homeodomain protein 9
TrEMBLA0A1S3THC20.0A0A1S3THC2_VIGRR; BEL1-like homeodomain protein 9
STRINGXP_007140461.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-101TALE family protein