PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0322s00070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 322aa    MW: 36635.9 Da    PI: 7.0005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0322s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.7e-09241298155
                        TT--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        ++kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  Vradi0322s00070.1 241 KKKRDKLPKDARQVLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRH 298
                        56777777777777777666544689*****************************885 PP
2ELK31.34.4e-11218239122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK+ LlrK+++++gsLk EFs
  Vradi0322s00070.1 218 ELKDKLLRKFGSHIGSLKLEFS 239
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-682119IPR005540KNOX1
PfamPF037901.4E-1284106IPR005540KNOX1
SMARTSM011884.3E-6218239IPR005539ELK domain
PfamPF037892.5E-8218239IPR005539ELK domain
PROSITE profilePS512139.865218238IPR005539ELK domain
PROSITE profilePS5007113.021238301IPR001356Homeobox domain
SuperFamilySSF466891.71E-19239312IPR009057Homeodomain-like
SMARTSM003891.5E-13240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-28243302IPR009057Homeodomain-like
CDDcd000866.79E-13250302No hitNo description
PfamPF059203.2E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDQMYGMTP TAEYSEKALM TPETIFPAEY HGFLMSSGSR IPMFGSDELL SAAVAITAAS  60
GAEPYPNVAV VPEIQRHHDS SSLIKAKIAS HPHYPRLLQA YIDCQKDLGT SLAWTCFNSL  120
FVYYLFLNVS VLAVKFCEHK IKNGGVPVLG MHHCILLRHS PLALMTDNRW NLPLNTDFLF  180
DFRLFLSYLD DGGVSSEEGF SAGDGDFQDE QVHNEDRELK DKLLRKFGSH IGSLKLEFSK  240
KKKRDKLPKD ARQVLLQWWN IHYKWPYPTE GDKIALAKST GLDQKQINNW FINQRKRHWK  300
PSENMPFSMV DGLTGRFLTD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246KKKKRDKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0322s00070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-161AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492132.11e-161homeobox protein knotted-1-like 6 isoform X1
RefseqXP_022633720.11e-161homeobox protein knotted-1-like 6 isoform X1
RefseqXP_022633722.11e-161homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS63e-85KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1S3TEF11e-160A0A1S3TEF1_VIGRR; homeobox protein knotted-1-like 6 isoform X1
STRINGXP_007153755.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-81KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]