PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0307s00130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 493aa    MW: 53880.6 Da    PI: 8.0196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0307s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13326372455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Vradi0307s00130.1 326 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 372
                        799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-2915109IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-15325376No hitNo description
SuperFamilySSF474591.96E-18325386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-18326384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-17328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MTFGGSDEDN YAFGLDRVTD TEMFFLASMY FSFPRGLGGP GKCFASGKHL WLSDVFKSSF  60
DYCVRSFLAK SAGIQTVVLV PTDMGVVEMG SVRMVGESFE LLQALKSVFS AQASMVPPRV  120
KPIAPFDLVS EKRDENANAP FSGVTIGDKE KNNSSNGSNN RVEGNGVPKI FGQDLNSVTQ  180
FREKLAVRKM EERPRVWGAH PNGNSVGFPN GIHGSGWGAG QVVRQLAPPE IHAPRLSPSG  240
ALSVPELGNG TRHDFVHNNY QQQRRAQMQI DFSGATSRAS GRSTIAESEI SDVEASCKEE  300
RTNVSDDRRP RKRGRKPANG REESLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL  360
LGDAIAYINE LQAKLKTMES ERERFGITSM DGSVVEANAR SENHSNGVPD VDVQAAQDGV  420
VVKVSCPVDV HPVSKVIQTF KEADIGVVDS KLTAANDTVF HTFVVKSQGP DQLTKEKLIA  480
LFSKESNLIQ TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29320382264Transcription factor MYC2
5gnj_B3e-29320382264Transcription factor MYC2
5gnj_E3e-29320382264Transcription factor MYC2
5gnj_F3e-29320382264Transcription factor MYC2
5gnj_G3e-29320382264Transcription factor MYC2
5gnj_I3e-29320382264Transcription factor MYC2
5gnj_M3e-29320382264Transcription factor MYC2
5gnj_N3e-29320382264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307315RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0307s00130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492520.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S3TFH10.0A0A1S3TFH1_VIGRR; transcription factor bHLH13
STRINGXP_007135266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-117bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]