PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g12880.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 363aa MW: 40931.7 Da PI: 7.628

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g12880.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.1e-11	76	109	3	36
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 +k +rr+++NReAAr+sR+RKka++++Le Vradi02g12880.1 76 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRL 109 7899*************************97544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.9E-8	70	120	No hit	No description
SMART	SM00338	8.3E-9	74	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.7E-8	76	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	76	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.5E-7	78	120	No hit	No description
CDD	cd14708	7.34E-22	78	130	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-32	164	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSASPQFVS SRRMSVYDPI HQISMWGEGF KSNGNLSASM PLIDEADMKL DSQSEDASHG 60 ILGAPNKYDQ EANKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER 120 ARQQGMYIGG GLDSNHLGFA GPVNSGITTF EMEYGHWVNE QNRQITELRT ALNAHIGDIE 180 LRILVDGMMN HYAEIFRMKS AAAKADVFYV MSGMWKTTAE RFFLWIGGFR PSELLKVLGP 240 LIELLTEQQQ LDIYNLGQSC QQAEDALSQG MDKLRQTLAD SVAAGQFMEG TYIPQMTCAM 300 EKLEALVSFV NQADHLRQGT LQQMSRILTI RQAARCLLAL GEYFQRLRAL SSLWSNRPRE 360 PA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSASPQFVS SRRMSVYDPI HQISMWGEGF KSNGNLSASM PLIDEADMKL DSQSEDASHG  60
ILGAPNKYDQ EANKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER  120
ARQQGMYIGG GLDSNHLGFA GPVNSGITTF EMEYGHWVNE QNRQITELRT ALNAHIGDIE  180
LRILVDGMMN HYAEIFRMKS AAAKADVFYV MSGMWKTTAE RFFLWIGGFR PSELLKVLGP  240
LIELLTEQQQ LDIYNLGQSC QQAEDALSQG MDKLRQTLAD SVAAGQFMEG TYIPQMTCAM  300
EKLEALVSFV NQADHLRQGT LQQMSRILTI RQAARCLLAL GEYFQRLRAL SSLWSNRPRE  360
PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g12880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF402607	0.0	AF402607.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA1.1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494273.1	0.0	transcription factor TGA4 isoform X2
Refseq	XP_017415870.1	0.0	PREDICTED: transcription factor TGA4-like isoform X1
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0S3S137	0.0	A0A0S3S137_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3TKH8	0.0	A0A1S3TKH8_VIGRR; transcription factor TGA4 isoform X2
STRING	XP_007163615.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-180	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]