PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g12180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 559aa    MW: 62678.3 Da    PI: 5.4589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g12180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like248.5e-08199220122
          G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                      k+r++W+ +LH++Fv+av+q+G
  Vradi02g12180.1 199 KARVVWSVDLHQKFVKAVNQIG 220
                      68******************97 PP
2Response_reg82.31.6e-27191271109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ +++l+++l+k +y ev+++  ++ al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Vradi02g12180.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 110
                      89*********************.***************999999**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el++
  Vradi02g12180.1 111 GACDYLLKPIRMKELRN 127
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.1E-3516147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-4416154No hitNo description
SMARTSM004485.6E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.32818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.12E-3020133No hitNo description
Gene3DG3DSA:1.10.10.601.6E-7197223IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDNGCFSSPR RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKRIHEA KEFESFESFE SIHLMRNGSE LSDEGNLFAV EDVTSTKKRK  180
DADNKHDDKE CMDPSSTKKA RVVWSVDLHQ KFVKAVNQIG FDSKFLLEKY RLYLIRIQKE  240
NDRRSSSSGM KHSDFPSKDL GSFGFQNPVN KQQNDVSTDS YNYSDGSLHL PTVENKNHEG  300
DKGTVSQFPI AKKGRPLTGN VADSNIRESS RVGLNQPFAQ SEGNHAVFDC SLPTQYSWTE  360
VPHMQLKEEH KSLVQLEDSF NQMPLHGKQH HIQVDQSQSV ASISSAPSIT EEEVPACIEA  420
KPLFSDFKND QSSSVNSIGN AVDTFSIQPG SLAMNAQSLE PISTTNSGLK AHGYNNLSCI  480
SDVEIYQRNL LLGGGAASAP LDEDLHFQWL QGECYNMNFG LQNIGMSEYY DPGLIAEAPS  540
HLYDSADYSV IDQGLFIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g12180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520235.10.0two-component response regulator ARR11-like isoform X1
TrEMBLA0A1S3VPM10.0A0A1S3VPM1_VIGRR; two-component response regulator ARR11-like isoform X1
STRINGXP_007163714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-102response regulator 11