PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g11710.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 898aa MW: 101303 Da PI: 5.1171

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g11710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.7	1.6e-51	15	130	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e kkrwlk+ e++ iL n++ elt++++++p gsl L+nr+++r+frkDG++w+kk+dg+tv E+he+LKvg+ e+l+cyYah+een++fq Vradi02g11710.1 15 QEaKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQ 108 5669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+Le e+e+ivlvhy+e+ Vradi02g11710.1 109 RRSYWMLEPEYEHIVLVHYRET 130 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.578	10	136	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.6E-67	13	131	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.7E-46	16	129	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.64E-11	420	488	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.1E-15	599	695	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.565	601	693	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.31E-15	605	696	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.0E-8	619	694	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.73E-13	621	693	No hit	No description
PROSITE profile	PS50088	11.327	634	666	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	634	663	IPR002110	Ankyrin repeat
SMART	SM00248	2400	673	702	IPR002110	Ankyrin repeat
SMART	SM00015	190	730	752	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.1E-5	739	782	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.0032	753	775	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.999	754	778	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	756	775	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MTMVGLEYNI DDLFQEAKKR WLKPVEVLYI LRNHDMCELT HQPPHQPAGG SLYLFNRRVT 60 RFFRKDGHNW RKKRDGRTVG EAHERLKVGN EEILNCYYAH GEENRSFQRR SYWMLEPEYE 120 HIVLVHYRET SKGKSNSEPF TPLSSGSPLA FSQSQSLYAA HDPGTSSVFG DSYELNHNFS 180 SPGSLEVTSE AQALRQLEEE LNINEDSFNE RVIYNDTSTT LSGPNDQGHL FVRYNGRQVI 240 DVCLLPMQHM PVASSSLTNN MLNCKERKAK SSETSVFSVD NSDTYCHDFP DDYPDGNEKT 300 IYWTEVLKAC KPLPVTNIPD QYGYEAFENE RSLFSPGREM IANMENNQWP NSNCNNVENS 360 VFALPQGDSG VKFPPCSLVE NPVTTFDYCE IVFDQTQIQE PLGVDSSLTV EQKQKFTIRT 420 VVIIGSFLYP HPGSTWACMF GDVEVPAKII QDGVISCETP SNLLGEVKLC ITSGNRVPCS 480 EVIEFEFRNK TTSCTRCNSL ETEDGRSPED LLLLVRFAEM LHSSSSKKDD STESGSRLST 540 EQKDGDDSWS HMIDTLLVGS GKSSDTVNWL LEELLKDKLQ LWLSNRSYER DEGTDCSLSK 600 KEQGIIHMIS GLGFEWALNP ILSCGVNINF RDINGWTALH WAAKFGREKM VASLIASGAS 660 AEAVTDPSSQ NPSGETAASV AASHGHKGLA GYLSEVHLTS HLSSLTLTAS KISEGSSELE 720 AELTVGSVSE ENIVASEDQK KYRGWKGRKE FLALRQKVVK IQAIVRGYQA RKQYKILLWA 780 VGILNKVVLR WRRKRVGITS VRQEVDSNEE ESDDEDFLNV FRKEKVNGAI EMALKRVLSM 840 VRHEDARHQY RRLLSLYRQA KTERDSTSDE APSSTSEEDP LNMEDDDWDL LWQKLCA*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MTMVGLEYNI DDLFQEAKKR WLKPVEVLYI LRNHDMCELT HQPPHQPAGG SLYLFNRRVT  60
RFFRKDGHNW RKKRDGRTVG EAHERLKVGN EEILNCYYAH GEENRSFQRR SYWMLEPEYE  120
HIVLVHYRET SKGKSNSEPF TPLSSGSPLA FSQSQSLYAA HDPGTSSVFG DSYELNHNFS  180
SPGSLEVTSE AQALRQLEEE LNINEDSFNE RVIYNDTSTT LSGPNDQGHL FVRYNGRQVI  240
DVCLLPMQHM PVASSSLTNN MLNCKERKAK SSETSVFSVD NSDTYCHDFP DDYPDGNEKT  300
IYWTEVLKAC KPLPVTNIPD QYGYEAFENE RSLFSPGREM IANMENNQWP NSNCNNVENS  360
VFALPQGDSG VKFPPCSLVE NPVTTFDYCE IVFDQTQIQE PLGVDSSLTV EQKQKFTIRT  420
VVIIGSFLYP HPGSTWACMF GDVEVPAKII QDGVISCETP SNLLGEVKLC ITSGNRVPCS  480
EVIEFEFRNK TTSCTRCNSL ETEDGRSPED LLLLVRFAEM LHSSSSKKDD STESGSRLST  540
EQKDGDDSWS HMIDTLLVGS GKSSDTVNWL LEELLKDKLQ LWLSNRSYER DEGTDCSLSK  600
KEQGIIHMIS GLGFEWALNP ILSCGVNINF RDINGWTALH WAAKFGREKM VASLIASGAS  660
AEAVTDPSSQ NPSGETAASV AASHGHKGLA GYLSEVHLTS HLSSLTLTAS KISEGSSELE  720
AELTVGSVSE ENIVASEDQK KYRGWKGRKE FLALRQKVVK IQAIVRGYQA RKQYKILLWA  780
VGILNKVVLR WRRKRVGITS VRQEVDSNEE ESDDEDFLNV FRKEKVNGAI EMALKRVLSM  840
VRHEDARHQY RRLLSLYRQA KTERDSTSDE APSSTSEEDP LNMEDDDWDL LWQKLCA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g11710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493819.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Refseq	XP_014493820.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Refseq	XP_022634526.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Refseq	XP_022634527.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	1e-122	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A1S3TJ63	0.0	A0A1S3TJ63_VIGRR; calmodulin-binding transcription activator 4 isoform X1
STRING	XP_007163775.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-103	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]