PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g10510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 364aa    MW: 39609.6 Da    PI: 6.7719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g10510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1164.9e-3622119289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnsssg. 88 
                      +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++    +  +a+++   ++++    +n+s + 
  Vradi02g10510.1  22 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELppwnP--TATSMqpPQQQEIALRENKSLPa 113
                      79**************************************************************76441..33222223333333333333333 PP

              TCP  89 .....k 89 
                           +
  Vradi02g10510.1 114 eqdptA 119
                      222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3322131IPR005333Transcription factor, TCP
PROSITE profilePS5136933.0332482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRAGAGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID ELAELPPWNP TATSMQPPQQ QEIALRENKS LPAEQDPTAF  120
GNRGESNVVV AATRVPEQFS HQQLESENAN IGTSKYTSGP GFLPPSLDTD NIAETIKTFF  180
PVEATTTSFQ SYPPAPPDLR QQDLRLSLQS FQDPIMLQHQ PQSHNEPVLF AGTALGFDGG  240
SAWSEHQNHH SEEHRLLFGG NSGHGGGFVF NTPAPAFGQF FSQRGPLQSS NTPSVRAWID  300
PSVDHHHHNH HYFSPLIHQG SVAGGFSNGG GFSGFRIPAR IQGEEEHDGV SDKPSSASSD  360
SRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-202982154Putative transcription factor PCF6
5zkt_B1e-202982154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g10510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494079.10.0transcription factor TCP4-like
SwissprotQ9MAH81e-100TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A1S3TJX40.0A0A1S3TJX4_VIGRR; transcription factor TCP4-like
STRINGXP_007133163.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-74TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]