PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g09140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27288.1 Da    PI: 4.9396
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g09140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.4e-1435731351
                     HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++k ++  +  A+ELSvLCdae a+iifs+tgkly ++s
  Vradi02g09140.1 35 LCKTKKRAFEEAYELSVLCDAELALIIFSTTGKLYKFCS 73
                     67888888999**************************96 PP
2K-box41.55.9e-15751234795
            K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      s +eL++Le+qL++slk+iRs++++++l+q++++q+k +e q ++ +L+
  Vradi02g09140.1  75 SSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKWEEYQINQFQLN 123
                      789**************************************99998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.1561575IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-51574IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-132696IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.44428128IPR002487Transcription factor, K-box
PfamPF003196.8E-113671IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-113752IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-115273IPR002100Transcription factor, MADS-box
PfamPF014863.5E-1073122IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
VRFYFNKRQR ERERDGKGKN GVEENREQDQ QASDLCKTKK RAFEEAYELS VLCDAELALI  60
IFSTTGKLYK FCSTSSNELE SLERQLDSSL KQIRSTRTQF MLDQLSDSQR KWEEYQINQF  120
QLNPSGEDIH YTAAESAGGS MMTYFFIENG AHAQQPPPAP LLQQHTSSYD DIMRGFYDPR  180
SFVGESFNTM NDNLNSRFEQ LEVNMGDRFD TLDTRVDHME HEIAYLRRQH GGPSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g09140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-95AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.17e-17MIKC_MADS family protein