PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08810.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 285aa    MW: 30611.3 Da    PI: 4.3757
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.12e-23135181451
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      ++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQ
  Vradi02g08810.1 135 VDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQ 181
                      68****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.718129190IPR017930Myb domain
TIGRFAMsTIGR015572.5E-22135181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.7E-21135181IPR009057Homeodomain-like
PfamPF002496.8E-6136181IPR001005SANT/Myb domain
SuperFamilySSF466894.66E-14136182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLAVAPLRSI KDEKNQREME AAKTTSDDDD FGELSEGNLL ESINFDDLFV GIDVGGDVLP  60
DLEMFGEFSV SAGEESSEMN SSGENSKEEN DRNCVLTVSK KEVEEDKSSC AASGQDSVSN  120
RGEEIVSKNG ESVVVDWTPE LHRRFVQAVE QLGVDKAVPS RILEIMGIDC LTRHNIASHL  180
QAPNALIPGT ACFPQPLTPT GFGTHHVPGI PPHAMYKADH TIGIHGPRPL LDFHPSKECI  240
DAAIGDVLSK PWLPLPLGLK APAIDSVMSE LQRQGIPNIP PSSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-155AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494176.11e-115transcription activator GLK1
TrEMBLA0A1S3TK931e-114A0A1S3TK93_VIGRR; transcription activator GLK1
STRINGXP_007132777.14e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.17e-28GOLDEN2-like 2