PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 309aa    MW: 34382.9 Da    PI: 6.3919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G+g+W++ ++  g+ R++k+c++rw +yl
  Vradi02g08170.1 14 KGPWTPEEDLKLINYIQTHGPGNWRSLPKSAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding537.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE++ +++++  +G++ W++Ia++++ gRt++++k++w+++
  Vradi02g08170.1  67 RGRFSLEEEDTIIQLHSIMGNK-WSSIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.462961IPR017930Myb domain
SuperFamilySSF466892.32E-3111108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002494.5E-171461IPR001005SANT/Myb domain
CDDcd001671.39E-121661No hitNo description
PROSITE profilePS5129425.71762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665116IPR009057Homeodomain-like
SMARTSM007175.2E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567111IPR001005SANT/Myb domain
CDDcd001674.50E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTPE EDLKLINYIQ THGPGNWRSL PKSAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SLEEEDTIIQ LHSIMGNKWS SIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DLLDMSSILR SVLNPSLSMQ GFLGGAQVLM NQGLLNLAAT ASLLENQNLA  180
SHNYVQNQVA QPLDITQLQS VEGFSGTMEN FSCSNSPSGD ENLVLQQNQV DLLGNHVFAH  240
SLKNAELKKG YDSAMPTPES SPNQLNSSSN YLRSCTEEEK NSFCSDLFEF DIPEGLDIAD  300
IFCTVPEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523933.10.0transcription factor MYB41 isoform X1
SwissprotQ9LDR82e-94MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1S3VZW80.0A0A1S3VZW8_VIGRR; transcription factor MYB41 isoform X1
STRINGXP_007132622.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-96MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]