PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 236aa    MW: 27330.3 Da    PI: 5.9926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+ +v+++G ++W+  ++  g+ R++k+c++rw +yl
  Vradi02g08130.1 14 KGAWCEEEDKKLIAYVQKHGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding55.99.9e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++++ d++k++G++ W++Ia+ ++ gRt++++k++w+++l
  Vradi02g08130.1  67 RGNYTPKEEQIITDLHKKHGNK-WSLIAESLP-GRTDNEIKNYWHSHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-23863IPR009057Homeodomain-like
PROSITE profilePS5129416.285961IPR017930Myb domain
SuperFamilySSF466893.91E-3012108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001672.06E-91661No hitNo description
PROSITE profilePS5129424.96962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2664114IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.3E-1667112IPR001005SANT/Myb domain
CDDcd001676.80E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRAPYFDKN GTKKGAWCEE EDKKLIAYVQ KHGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TPKEEQIITD LHKKHGNKWS LIAESLPGRT DNEIKNYWHS HLKKFENSNN  120
NSSCDEDLKS NGCKEFEMEM NEAHSVESHN ILESSVSISS ETSYTDHNSP CLSFCSSHTE  180
STMNLCKEEE SVASWETLDL GFSSNFWTEP FISENALDEN YFDISSYGTE PFYLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251411427126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493695.11e-176transcription factor MYB14
TrEMBLA0A1S3TIW51e-175A0A1S3TIW5_VIGRR; transcription factor MYB14
STRINGGLYMA06G45520.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.15e-55myb domain protein 92