PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g08110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25899.2 Da PI: 7.2522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l +v+++G +W+ ++ g+ R++k+c++rw++yl Vradi02g08110.1 14 KGAWSREEDDKLRAYVHKYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ T+eE+e+++++++q+G++ W++Ia+++ gRt++++k++w+++l Vradi02g08110.1 68 GNYTPEEEEIIIRLHQQFGNR-WSLIAEKLA-GRTDNEVKNYWHSHL 112 789******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.39 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.93E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.17E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.792 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.52E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-27 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVRTPFYDKN GVKKGAWSRE EDDKLRAYVH KYGHSNWRQL PKFAGLARCG KSCRLRWLNY 60 LRPNLKHGNY TPEEEEIIIR LHQQFGNRWS LIAEKLAGRT DNEVKNYWHS HLKKSLKRSE 120 MTASELKLKG ADDKSFEGNL KENCGDDIFP HILESSLAIS AETAEGDNYS EDGLPPLVSY 180 KQFSGDFWSE PFLLEDTIHT FKDDIFTAKG MALLIPNFDA AYFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g08110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-72 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523889.1 | 1e-168 | transcription factor MYB14-like | ||||
TrEMBL | A0A1S3W0T6 | 1e-167 | A0A1S3W0T6_VIGRR; transcription factor MYB14-like | ||||
STRING | XP_007132613.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 7e-59 | myb domain protein 14 |