PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 313aa    MW: 34732.4 Da    PI: 4.706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
  Vradi02g08100.1 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLERCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding57.23.9e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E++ +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
  Vradi02g08100.1  67 RGNFTPQEEDCIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-23664IPR009057Homeodomain-like
PROSITE profilePS5129416.918961IPR017930Myb domain
SuperFamilySSF466894.93E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-111363IPR001005SANT/Myb domain
PfamPF002498.4E-141461IPR001005SANT/Myb domain
CDDcd001678.92E-101661No hitNo description
PROSITE profilePS512942762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665115IPR009057Homeodomain-like
SMARTSM007172.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.64E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLERCG KSCRLRWMNY  60
LRPNVKRGNF TPQEEDCIIR MHKKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSEQNT  120
VTNEEARAFK SKNKESNPNG FTVTLPSNSG TSDNASASVS PLSSSSSVFS STASDDCSGA  180
SMKSLVFEDD DFGFLDSYME PMNDSFWSEL NLDDISYSAA CEIVSGDSNG AIQSSDTSVN  240
DCCAMSPHGS SSESIVIDNG SGSFLDAYAE ATVENLWMQP YVADMSHVPS ELLVPSVVES  300
EYFTPIYYDL WG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493625.10.0transcription factor MYB13-like
TrEMBLA0A1S3TIP80.0A0A1S3TIP8_VIGRR; transcription factor MYB13-like
STRINGXP_007132612.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-60myb domain protein 14