PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 359aa    MW: 40389.6 Da    PI: 7.3808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Vradi02g08090.1 14 KGTWTPEEDRKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding54.82.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++  k lG++ W++Ia++++ gRt++++k++w++ 
  Vradi02g08090.1  67 RGNFTPQEEECIIRMLKNLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.708961IPR017930Myb domain
SuperFamilySSF466898.11E-2911108IPR009057Homeodomain-like
SMARTSM007171.4E-91363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-231568IPR009057Homeodomain-like
CDDcd001672.34E-91661No hitNo description
PROSITE profilePS5129426.03562116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2569116IPR009057Homeodomain-like
CDDcd001672.65E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDRKLVAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TPQEEECIIR MLKNLGNRWS AIAAELPGRT DNEIKNHWHT TLKKKYQQNT  120
VTNEDARASK SKKKDSVPNK NGVTVRLPAT SQISDNSSFS PVSSSSSEFS SLSSDLSSCT  180
SMENLLFEDD LGFLDSYVNE SFWKELNLDG VPCESRDTTS TEMVDSCASS ESVVVDNDFG  240
SFLDAYGEVT FDNFWSQPYV ADVSHVPSEL LVPSVTNWNQ LHALCKSFDA IFWFATLGFF  300
NPSMVLLQPP SQWFFNIDAL GFFKHPSLLT FITPPRSHSV LFLVMGIPSS SPTSRIGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493503.10.0transcription factor MYB14
TrEMBLA0A1S3TIA10.0A0A1S3TIA1_VIGRR; transcription factor MYB14
STRINGXP_007132611.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-58myb domain protein 14