PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 220aa    MW: 25489 Da    PI: 5.6439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++lvd+++++G  +W++ ++  g+ R++k+c++rw++yl
  Vradi02g08080.1 15 RGTWTPEEDKKLVDYITRYGHWNWRLLPQFAGLARCGKSCRLRWLNYL 62
                     89******************99************************97 PP
2Myb_DNA-binding56.65.7e-1868112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  Vradi02g08080.1  68 RGNYTEEEEETIIKLHRHLGNR-WSAIAAQIP-GRTDNEIKNYWNTN 112
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6931062IPR017930Myb domain
SuperFamilySSF466895.35E-2912109IPR009057Homeodomain-like
SMARTSM007178.4E-111464IPR001005SANT/Myb domain
PfamPF002495.7E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-231669IPR009057Homeodomain-like
CDDcd001671.21E-81762No hitNo description
PROSITE profilePS5129424.01863117IPR017930Myb domain
SMARTSM007174.3E-1767115IPR001005SANT/Myb domain
PfamPF002498.5E-1768113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2570116IPR009057Homeodomain-like
CDDcd001671.87E-681113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMVRTPSSDK NGLKRGTWTP EEDKKLVDYI TRYGHWNWRL LPQFAGLARC GKSCRLRWLN  60
YLRPNLKRGN YTEEEEETII KLHRHLGNRW SAIAAQIPGR TDNEIKNYWN TNLKKRFEQD  120
RATESQVSNS CERSSTTTTT EASANTFSQH SSSSATSAEF NTVTINENLD LQDEFSFWDA  180
DTDLVSANFW LEPYIHDISY AATEPEFFTF DAQLWSHDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29131185109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-102AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634322.11e-164transcription factor MYB13-like
SwissprotQ9LTC42e-59MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A3Q0EVZ21e-163A0A3Q0EVZ2_VIGRR; transcription factor MYB13-like
STRINGXP_007132610.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-59myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]